PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G27840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 278aa    MW: 30274.2 Da    PI: 6.8468
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G27840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-172576155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  OBART04G27840.1 25 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 76
                     57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-112576IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-182585IPR016177DNA-binding domain
CDDcd000182.83E-252585No hitNo description
SMARTSM003803.0E-322690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-182684IPR001471AP2/ERF domain
PROSITE profilePS5103219.1372684IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKHMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFGTE  60
EEAAEAYDIA AIKFRGLNAV TNFEIGRYNV ESIISSNLPI GSMAGNRSTK AGLELAPSSS  120
ADAIAATEAN HTGVAPPSTL AFTALPMKYD QADYLSYLAL QHHQQGNLQG LGFGLYSSGV  180
NLDFANANGN GTMSNCYTNV SLHEQQQHQH QHQHQHQQEQ QQDQQDDQSQ SSNNSCGSIP  240
FATPIAFSGS YESSMTAAGT FGYYPNVAAF QTPIFGME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118910.0AK111891.1 Oryza sativa Japonica Group cDNA clone:J033072A06, full insert sequence.
GenBankAY0621790.0AY062179.1 Oryza sativa aintegumenta-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633701.11e-177PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ34e-63AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0D3G1240.0A0A0D3G124_9ORYZ; Uncharacterized protein
TrEMBLI1PQD90.0I1PQD9_ORYGL; Uncharacterized protein
STRINGORGLA04G0240800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-58AINTEGUMENTA-like 5